Publications
* denotes equal contribution. # In review/In prep
#
Bangru, S., Diegmiller, R., Di Talia, S., Poss, K.D. (2024). Signal control of regeneration. In preparation.
#
Chembazhi, U.V.*, Bangru, S.*, Dutta, R., Das, D., Pieffer, B., Natua, S., Toohill, K., Leona, A., Purwar, I., Bhowmik, A., Goyal, Y., Sun, Z., Diehl, A.M., Kalsotra, A. (2024). Dysregulation of RNA splicing induces liver regeneration failure in alcohol-associated liver disease. In review.
#
Song, Y.J., Shinn, M.K.*, Bangru, S.*, Wang, Y., Sun, Q., Hao, Q., Chaturvedi, P., Freier, S.M., Perez-Pinera, P., Nelson, E.R., Belmont, A.S., Guttman, M., Prasanth, S.G., Kalsotra, A., Pappu, R., Prasanth, K.V. (2024). Nuclear speckle resident lncRNA-splicing factor condensates regulate hypoxia responsive RNA processing of genes pre-positioned in speckle- hubs. In review.
#
Gillotay, P., Mirian, R., Dassy, B., Bangru, S., Haerlingen, B., Shankar, M.P., Fonseca, B.F., Ziros, G.P., Singh, S.P., Sykiotis, P.S., Costagliola, S. (2024). NRF2/nrf2a promotes maturation and hormone synthesis in mammalian and non-mammalian thyroid. In review.
#
Zhou, W., Chembazhi, U.V., Huang, J., Bangru, S., Dean, A.E., Kalsotra, A., Rudnick, D.A., Anakk, S. (2024). Excess bile acid increase after partial hepatectomy in constitutive androstane receptor knockout mice drives regeneration. In review.
20.
Bangru, S., Chen, J., Baker, N., Chembazhi, U.V., Das, D., Derham, J.M., Chorghade, S., Arif, W., Alencastro, F., Duncan, A.W., Carstens, R.P., Kalsotra, A. (2024). ESRP2-microRNA-122 axis directs the postnatal onset of liver polyploidization and maturation. Genes & Development, In press. [bioRxiv]
19.
Goo, Y.H., Ayyappan, J.P., Cheeran, F.D., Bangru, S., Saha, P.K., Baar, P., Schulz, S., Lydic, T.A., Spengler, B., Wagner, A.H., Kalsotra, A., Yechoor, V.K., Paul, A. (2024). Lipid droplet-associated hydrolase mobilizes stores of liver X receptor sterol ligands and protects against atherosclerosis. Nature Communications, 15(1):6540. [link]
18.
Iyer, R.R., Applegate, C.C., Arogundade, O.H., Bangru, S., Berg, I.C., Emon, B., Porras-Gomez, M., Hsieh, P., Jeong, Y., Kim, Y., Knox, H.J., Moghaddam, A.O., Renteria, C.A., Richard, C., Santaliz-Casiano, A., Sengupta, S., Wang, J., Zambuto, S.G., Zeballos, M.A., Pool, M., Bhargava, R., Gaskins, H.R. (2024). Inspiring a convergent engineering approach to measure and model the tissue microenvironment. Heliyon, 10(12):e32546. [link]
17.
Ando, K., Ou, J., Thompson, J., Welsby, J., Bangru, S., Shen, J., Wei, X., Diao, Y., Poss, K.D. (2024). A screen for regeneration-associated silencer regulatory elements in zebrafish. Developmental Cell, 59(5):676-691. [link]
16.
Piersma, S.J.*, Bangru, S.*, Yoon, J., Liu, T., Yang, L., Hsieh, C.S., Plougastel-Douglas, B., Kalsotra, A., Yokoyama, W.M. (2023). NK cell expansion requires HuR and mediates innate immune control of solid tumors and long-term virus infection. Journal of Experimental Medicine, 220(11):e20231154. [link]
15.
Srivastava, I., Lew, B., Wang, Y., Blair, S., George, M.B., Hajek, B.S., Bangru, S., Pandit, S., Wang, Z., Ludwig, J., Flatt, K., Gruebele, M., Nie, S., Gruev, V. (2023). Cell-membrane coated nanoparticles for tumor delineation and qualitative estimation of cancer biomarkers at single wavelength excitation in murine and phantom models. ACS Nano, 17(9):8465-8482. [link]
14.
Chembazhi, U.V., Tung, W.S., Hwang, H., Wang, Y., Lalwani, A., Nguyen, K.L., Bangru, S., Yee, D., Chin, K., Yang, J., Kalsotra, A., Mei, W. (2023). PTBP1 controls intestinal epithelial regeneration through post-transcriptional regulation of gene expression. Nucleic Acids Research, 51(5):2397-2414. [link] [bioarxiv]
13.
Arif, W., Mathur, B., Saki M.F., Chembazhi, U.V., Toohill, K., Song, Y.J., Hao, Q., Karimi, S., Blue, S.M., Yee, B.A., Van Nostrand, E.L., Bangru, S., Guzman, G., Yeo, G.W., Prasanth, K.V., Anakk, S., Cummins, C., Kalsotra, A. (2023). Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology via R-loop induced DNA damage and cell death. Nature Communications, 14(1):551. [link] [bioarxiv]
12.
Sonam, S.*, Bangru, S.*, Perry, K.J., Chembazhi, U.V., Kalsotra, A., Henry, J.J. (2022). Single-cell analysis of the X. Laevis cornea reveals novel basal and apical epithelial markers. Developmental Biology, 491:13-30. [link] [bioarxiv]
11.
Peng, J., Serrano, G., Traniello, I.M., Calleja-Cervantes, M.E., Chembazhi, U.V., Bangru, S., Ezponda, T., Rodriguez-Madoz, J.R., Kalsotra, A., Prosper, F., Ochoa, I., Hernaez, M. (2022). Single cell analysis of the X. A single-cell gene regulatory network inference method for identifying complex regulatory dynamics across cell phenotypes. Communications Biology, 5:351. [bioarxiv] [link]
10.
Chembazhi, U.V.*, Bangru, S.*, Hernaez, M., Kalsotra, A. (2021). Cellular plasticity balances metabolic and proliferation dynamics of a regenerating liver. Genome Research. [link] [bioarxiv]
9.
Kumar, S., Bangru, S., Kumar, R., Rao, D. (2020). Promiscuous DNA cleavage by HpyAII endonuclease is modulated by the HNH motif catalytic residues. Bioscience Reports, 40(9):BSR20201633. [link]
8.
Sun, Q., Hao, Q., Lin, Y.C., Song, YJ., Bangru, S., Arif, W., Tripathi, V., Zhang, Y., Cho, J.H., Freier, S.M., Jenkins, L.M., Ma, J., Yoon, J.H., Kalsotra, A., Lal, A., Prasanth, S.G., Prasanth, K.V. (2020). MicroRNA-host gene lncRNA regulates the cell cycle re-entry post cellular quiescence. RNA, rna.075309.120. [link]
7.
Srivastava, I., Misra, S.K., Bangru, S., Boateng, K.A., Soares, J.A.N.T., Schwartz-Duval, A.S., Kalsotra, A., & Pan, D. (2020). Complementary Oligonucleotide Conjugated Multicolor Carbon Dots for Intracellular Recognition of Biological Events. ACS Applied material & Interfaces, 12(14), 16137-16149. [link]
6.
Bangru, S., & Kalsotra, A. (2020). Cellular and molecular basis of liver regeneration. Seminars in Cell & Developmental Biology, 100, 74-87. [link]
5.
Hyun, J., Sun, Z., Ahmadi, A.R., Bangru, S., Chembazhi, U.V., Du, K., Chen, T., Tsukamoto, H., Rusyn, I., Kalsotra, A., & Diehl, A.M. (2020). ESRP2-mediated alternative splicing reprograms hepatocytes in severe alcoholic hepatitis. Journal of Clinical Investigation, 130(4), 2129-2145. [link]
4.
Misra, C., Bangru, S., Lin, F., Lam, K., Koenig, S., Lubbers, E., Hedhli, J., Murphy, N., Parker, D.J., Dobrucki, W.L., Cooper, T.A., Tajkhorshid, E., Mohler, P., & Kalsotra, A. (2020). Aberrant Expression of a Non-muscle RBFOX2 Isoform Triggers Cardiac Conduction Defects in Myotonic Dystrophy. Developmental Cell, 52(6), 748-763. [link]
3.
Seimetz, J., Arif, W., Bangru, S., Hernaez, M., & Kalsotra, A. (2019). High resolution and cell-type specific polysome profiling from tissues. Methods, 155,131-139. [link]
2.
Bangru, S.*, Arif, W.*, Seimetz, J., Bhate, A., Chen, J., Rashan, E.H., Carstens, R.P., Anakk S., & Kalsotra, A. (2018). Alternative Splicing rewires Hippo Signaling pathway in hepatocytes to promote liver regeneration. Nature Structural & Molecular Biology, 25(10), 928-939. [link]
1.
Bangru, S., & Kalsotra, A. (2016). Advances in analyzing RNA diversity in eukaryotic transcriptomes: peering through the Omics lens. F1000Research, 5:2668. [link]